Index

A

Adata (class in MidlineIdentifier.adata_class)

ADProcess() (MidlineIdentifier.Budoids_class.Budoid method)

B

Budoid (class in MidlineIdentifier.Budoids_class)

C

Concat() (MidlineIdentifier.Budoids_class.Budoid method)

E

EnrichBins() (MidlineIdentifier.adata_class.Adata method)

EuclideanDist() (in module MidlineIdentifier.utilis)

F

FindDEG() (MidlineIdentifier.adata_class.Adata method) (MidlineIdentifier.Budoids_class.Budoid method) FindOrientation() (MidlineIdentifier.adata_class.Adata method) (MidlineIdentifier.Budoids_class.Budoid method)

FindPath() (MidlineIdentifier.Budoids_class.Budoid method) (MidlineIdentifier.image_class.Img method) FindRidge() (MidlineIdentifier.image_class.Img method) FindSVG() (MidlineIdentifier.adata_class.Adata method) (MidlineIdentifier.Budoids_class.Budoid method)

G

GetAspectRatio() (MidlineIdentifier.image_class.Img method)

GetStartEnd() (MidlineIdentifier.image_class.Img method) grouped_obs() (in module MidlineIdentifier.utilis)

I

Image_measurement() (MidlineIdentifier.image_class.Img method)

Img (class in MidlineIdentifier.image_class)

M

MidlineIdentifier module MidlineIdentifier.adata_class module MidlineIdentifier.Budoids_class module MidlineIdentifier.image_class module MidlineIdentifier.io module MidlineIdentifier.plotting module

MidlineIdentifier.utilis module module MidlineIdentifier MidlineIdentifier.adata_class MidlineIdentifier.Budoids_class MidlineIdentifier.image_class MidlineIdentifier.io MidlineIdentifier.plotting MidlineIdentifier.utilis

P

Padding() (MidlineIdentifier.image_class.Img method) ParseArgs() (in module MidlineIdentifier.utilis)

PolarizationScoring() (MidlineIdentifier.adata_class.Adata method) Preprocessing() (MidlineIdentifier.adata_class.Adata method) ProjectCells() (MidlineIdentifier.Budoids_class.Budoid method)

R

ReadObj() (in module MidlineIdentifier.io) RMOutliers() (MidlineIdentifier.Budoids_class.Budoid method)

RMSmallRegion() (MidlineIdentifier.image_class.Img method) run_wrapper() (MidlineIdentifier.Budoids_class.Budoid method)

S

SaveObj() (in module MidlineIdentifier.io)

ScaleMinMax() (in module MidlineIdentifier.utilis) Segmentation() (MidlineIdentifier.image_class.Img method)

T

trend_plot() (in module MidlineIdentifier.plotting)